Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]

Approximately 40% of earthworm species can reproduce by parthenogenesis. This is the case for the cosmopolitan species, Aporrectodea trapezoides, although sexual forms have been described sporadically. We analyse the genotypes and microbiomes of 30 individuals from four localities where both forms a...

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Detalhes bibliográficos
Autores: Sosa, Irene de, Turon, Marta, Taboada, Sergi, Lorente-Sorolla, José, Fernández, Rosa, Tilikj, Natasha, Piris, Alberto, Novo, Marta, Álvarez-Campos, Patricia, Riesgo Gil, Ana
Formato: conjunto de datos
Fecha de publicación:2025
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/409087
Acesso em linha:http://hdl.handle.net/10261/409087
Access Level:acceso abierto
Palavra-chave:Earthworm
Parthenogenesis
Parthenogenesis/genetics
Gastrointestinal microbiome
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network_acronym_str ES
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repository_id_str
spelling Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]Sosa, Irene deTuron, MartaTaboada, SergiLorente-Sorolla, JoséFernández, RosaTilikj, NatashaPiris, AlbertoNovo, MartaÁlvarez-Campos, PatriciaRiesgo Gil, AnaEarthwormParthenogenesisParthenogenesis/geneticsGastrointestinal microbiomeApproximately 40% of earthworm species can reproduce by parthenogenesis. This is the case for the cosmopolitan species, Aporrectodea trapezoides, although sexual forms have been described sporadically. We analyse the genotypes and microbiomes of 30 individuals from four localities where both forms appear in order to understand the evolutionary mechanisms related to parthenogenesis. In all sites, heterozygosity values were approximately 30% higher in parthenogenetic individuals. However, we detected a stronger genomic structuring due to the reproduction than to the geographical setting only in the Algerian population, underpinned by 195 loci. These loci were mapped against the annotated transcriptome of A. trapezoides using FANTASIA, finding annotations in 105 of them. This Gene Ontology (GO) terms obtained were related to gamete production, such as oocyte fate dermination and flagellated sperm mobility. We also found several other GO terms were involved in the processes mediating with other organisms including symbiont-mediated perturbation of host cell cycle G0/G1 transition checkpoint and actin-dependent intracellular transport of virus towards nucleus. The transcriptome was the novo assembled using Trinity v2.11.0 . Open Reading Frames (ORFs) were inferred with TransDecoder v.5.5.0.Peer reviewedZenodoSosa, Irene de [0000-0002-4020-6375]Turon, Marta [0000-0002-3806-4937]Riesgo Gil, Ana [0000-0002-7993-1523]Riesgo Gil, AnaSosa, Irene deTaboada, SergiConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202520252025info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1fastacdspephttp://hdl.handle.net/10261/409087reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésSosa, Irene de; Turon, Marta; Taboada, Sergi; Lorente-Sorolla, José; Fernández, Rosa; Tilikj, Natasha; Piris, Alberto; Novo, Marta; Álvarez-Campos, Patricia; Riesgo Gil, Ana. No Mate, No Problem: Molecular Mechanisms Involved in Parthenogenesis in the Cosmopolitan Earthworm Aporrectodea trapezoides (Annelida, Clitellata). https://doi.org/10.1111/mec.70010. http://hdl.handle.net/10261/409066https://doi.org/10.5281/zenodo.15600607Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/4090872026-05-22T06:33:51Z
dc.title.none.fl_str_mv Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
title Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
spellingShingle Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
Sosa, Irene de
Earthworm
Parthenogenesis
Parthenogenesis/genetics
Gastrointestinal microbiome
title_short Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
title_full Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
title_fullStr Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
title_full_unstemmed Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
title_sort Transcriptome of Aporrectodea trapezoides (Annelida, Oligochaeta) [Dataset]
dc.creator.none.fl_str_mv Sosa, Irene de
Turon, Marta
Taboada, Sergi
Lorente-Sorolla, José
Fernández, Rosa
Tilikj, Natasha
Piris, Alberto
Novo, Marta
Álvarez-Campos, Patricia
Riesgo Gil, Ana
author Sosa, Irene de
author_facet Sosa, Irene de
Turon, Marta
Taboada, Sergi
Lorente-Sorolla, José
Fernández, Rosa
Tilikj, Natasha
Piris, Alberto
Novo, Marta
Álvarez-Campos, Patricia
Riesgo Gil, Ana
author_role author
author2 Turon, Marta
Taboada, Sergi
Lorente-Sorolla, José
Fernández, Rosa
Tilikj, Natasha
Piris, Alberto
Novo, Marta
Álvarez-Campos, Patricia
Riesgo Gil, Ana
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sosa, Irene de [0000-0002-4020-6375]
Turon, Marta [0000-0002-3806-4937]
Riesgo Gil, Ana [0000-0002-7993-1523]
Riesgo Gil, Ana
Sosa, Irene de
Taboada, Sergi
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Earthworm
Parthenogenesis
Parthenogenesis/genetics
Gastrointestinal microbiome
topic Earthworm
Parthenogenesis
Parthenogenesis/genetics
Gastrointestinal microbiome
description Approximately 40% of earthworm species can reproduce by parthenogenesis. This is the case for the cosmopolitan species, Aporrectodea trapezoides, although sexual forms have been described sporadically. We analyse the genotypes and microbiomes of 30 individuals from four localities where both forms appear in order to understand the evolutionary mechanisms related to parthenogenesis. In all sites, heterozygosity values were approximately 30% higher in parthenogenetic individuals. However, we detected a stronger genomic structuring due to the reproduction than to the geographical setting only in the Algerian population, underpinned by 195 loci. These loci were mapped against the annotated transcriptome of A. trapezoides using FANTASIA, finding annotations in 105 of them. This Gene Ontology (GO) terms obtained were related to gamete production, such as oocyte fate dermination and flagellated sperm mobility. We also found several other GO terms were involved in the processes mediating with other organisms including symbiont-mediated perturbation of host cell cycle G0/G1 transition checkpoint and actin-dependent intracellular transport of virus towards nucleus. The transcriptome was the novo assembled using Trinity v2.11.0 . Open Reading Frames (ORFs) were inferred with TransDecoder v.5.5.0.
publishDate 2025
dc.date.none.fl_str_mv 2025
2025
2025
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
format dataset
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/409087
url http://hdl.handle.net/10261/409087
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Sosa, Irene de; Turon, Marta; Taboada, Sergi; Lorente-Sorolla, José; Fernández, Rosa; Tilikj, Natasha; Piris, Alberto; Novo, Marta; Álvarez-Campos, Patricia; Riesgo Gil, Ana. No Mate, No Problem: Molecular Mechanisms Involved in Parthenogenesis in the Cosmopolitan Earthworm Aporrectodea trapezoides (Annelida, Clitellata). https://doi.org/10.1111/mec.70010. http://hdl.handle.net/10261/409066
https://doi.org/10.5281/zenodo.15600607
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv fasta
cds
pep
dc.publisher.none.fl_str_mv Zenodo
publisher.none.fl_str_mv Zenodo
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869413611231772672
score 15.198674

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