The transposable element-rich genome of the cereal pest Sitophilus oryzae
Background The rice weevil Sitophilus oryzae is one of the most important agricultural pests, causing extensive damage to cereal in fields and to stored grains. S. oryzae has an intracellular symbiotic relationship (endosymbiosis) with the Gram-negative bacterium Sodalis pierantonius and is a valuab...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2021 |
| País: | España |
| Recursos: | Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO) |
| Repositorio: | r-FISABIO. Repositorio Institucional de Producción Científica |
| OAI Identifier: | oai:fisabio.fundanetsuite.com:p11936 |
| Acesso em linha: | https://fisabio.portalinvestigacion.com/publicaciones/11936 |
| Access Level: | acceso abierto |
| Palavra-chave: | Coleoptera Weevil Sitophilus oryzae Genome Transposable elements Endosymbiosis Immunity Evolution |
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The transposable element-rich genome of the cereal pest Sitophilus oryzaeParisot NVargas-Chávez CGoubert CBaa-Puyoulet PBalmand SBeranger LBlanc CBonnamour ABoulesteix MBurlet NCalevro FCallaerts PChancy TCharles HColella SDa Silva Barbosa ADell'Aglio EDi Genova AFebvay GGabaldón TGalvão Ferrarini MGerber AGillet BHubley RHughes SJacquin-Joly EMaire JMarcet-Houben MMasson FMeslin CMontagné NMoya ARibeiro de Vasconcelos ATRichard GRosen JSagot MFSmit AFAStorer JMVincent-Monegat CVallier AVigneron AZaidman-Rémy AZamoum WVieira CRebollo RLatorre AHeddi AColeopteraWeevilSitophilus oryzaeGenomeTransposable elementsEndosymbiosisImmunityEvolutionBackground The rice weevil Sitophilus oryzae is one of the most important agricultural pests, causing extensive damage to cereal in fields and to stored grains. S. oryzae has an intracellular symbiotic relationship (endosymbiosis) with the Gram-negative bacterium Sodalis pierantonius and is a valuable model to decipher host-symbiont molecular interactions. Results We sequenced the Sitophilus oryzae genome using a combination of short and long reads to produce the best assembly for a Curculionidae species to date. We show that S. oryzae has undergone successive bursts of transposable element (TE) amplification, representing 72% of the genome. In addition, we show that many TE families are transcriptionally active, and changes in their expression are associated with insect endosymbiotic state. S. oryzae has undergone a high gene expansion rate, when compared to other beetles. Reconstruction of host-symbiont metabolic networks revealed that, despite its recent association with cereal weevils (30 kyear), S. pierantonius relies on the host for several amino acids and nucleotides to survive and to produce vitamins and essential amino acids required for insect development and cuticle biosynthesis. Conclusions Here we present the genome of an agricultural pest beetle, which may act as a foundation for pest control. In addition, S. oryzae may be a useful model for endosymbiosis, and studying TE evolution and regulation, along with the impact of TEs on eukaryotic genomes.BMC2021info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttps://fisabio.portalinvestigacion.com/publicaciones/11936BMC BIOLOGYISSN: 17417007reponame:r-FISABIO. Repositorio Institucional de Producción Científicainstname:Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)Inglésinfo:eu-repo/semantics/openAccessoai:fisabio.fundanetsuite.com:p119362026-06-11T12:45:17Z |
| dc.title.none.fl_str_mv |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| title |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| spellingShingle |
The transposable element-rich genome of the cereal pest Sitophilus oryzae Parisot N Coleoptera Weevil Sitophilus oryzae Genome Transposable elements Endosymbiosis Immunity Evolution |
| title_short |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| title_full |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| title_fullStr |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| title_full_unstemmed |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| title_sort |
The transposable element-rich genome of the cereal pest Sitophilus oryzae |
| dc.creator.none.fl_str_mv |
Parisot N Vargas-Chávez C Goubert C Baa-Puyoulet P Balmand S Beranger L Blanc C Bonnamour A Boulesteix M Burlet N Calevro F Callaerts P Chancy T Charles H Colella S Da Silva Barbosa A Dell'Aglio E Di Genova A Febvay G Gabaldón T Galvão Ferrarini M Gerber A Gillet B Hubley R Hughes S Jacquin-Joly E Maire J Marcet-Houben M Masson F Meslin C Montagné N Moya A Ribeiro de Vasconcelos AT Richard G Rosen J Sagot MF Smit AFA Storer JM Vincent-Monegat C Vallier A Vigneron A Zaidman-Rémy A Zamoum W Vieira C Rebollo R Latorre A Heddi A |
| author |
Parisot N |
| author_facet |
Parisot N Vargas-Chávez C Goubert C Baa-Puyoulet P Balmand S Beranger L Blanc C Bonnamour A Boulesteix M Burlet N Calevro F Callaerts P Chancy T Charles H Colella S Da Silva Barbosa A Dell'Aglio E Di Genova A Febvay G Gabaldón T Galvão Ferrarini M Gerber A Gillet B Hubley R Hughes S Jacquin-Joly E Maire J Marcet-Houben M Masson F Meslin C Montagné N Moya A Ribeiro de Vasconcelos AT Richard G Rosen J Sagot MF Smit AFA Storer JM Vincent-Monegat C Vallier A Vigneron A Zaidman-Rémy A Zamoum W Vieira C Rebollo R Latorre A Heddi A |
| author_role |
author |
| author2 |
Vargas-Chávez C Goubert C Baa-Puyoulet P Balmand S Beranger L Blanc C Bonnamour A Boulesteix M Burlet N Calevro F Callaerts P Chancy T Charles H Colella S Da Silva Barbosa A Dell'Aglio E Di Genova A Febvay G Gabaldón T Galvão Ferrarini M Gerber A Gillet B Hubley R Hughes S Jacquin-Joly E Maire J Marcet-Houben M Masson F Meslin C Montagné N Moya A Ribeiro de Vasconcelos AT Richard G Rosen J Sagot MF Smit AFA Storer JM Vincent-Monegat C Vallier A Vigneron A Zaidman-Rémy A Zamoum W Vieira C Rebollo R Latorre A Heddi A |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
Coleoptera Weevil Sitophilus oryzae Genome Transposable elements Endosymbiosis Immunity Evolution |
| topic |
Coleoptera Weevil Sitophilus oryzae Genome Transposable elements Endosymbiosis Immunity Evolution |
| description |
Background The rice weevil Sitophilus oryzae is one of the most important agricultural pests, causing extensive damage to cereal in fields and to stored grains. S. oryzae has an intracellular symbiotic relationship (endosymbiosis) with the Gram-negative bacterium Sodalis pierantonius and is a valuable model to decipher host-symbiont molecular interactions. Results We sequenced the Sitophilus oryzae genome using a combination of short and long reads to produce the best assembly for a Curculionidae species to date. We show that S. oryzae has undergone successive bursts of transposable element (TE) amplification, representing 72% of the genome. In addition, we show that many TE families are transcriptionally active, and changes in their expression are associated with insect endosymbiotic state. S. oryzae has undergone a high gene expansion rate, when compared to other beetles. Reconstruction of host-symbiont metabolic networks revealed that, despite its recent association with cereal weevils (30 kyear), S. pierantonius relies on the host for several amino acids and nucleotides to survive and to produce vitamins and essential amino acids required for insect development and cuticle biosynthesis. Conclusions Here we present the genome of an agricultural pest beetle, which may act as a foundation for pest control. In addition, S. oryzae may be a useful model for endosymbiosis, and studying TE evolution and regulation, along with the impact of TEs on eukaryotic genomes. |
| publishDate |
2021 |
| dc.date.none.fl_str_mv |
2021 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
https://fisabio.portalinvestigacion.com/publicaciones/11936 |
| url |
https://fisabio.portalinvestigacion.com/publicaciones/11936 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess |
| eu_rights_str_mv |
openAccess |
| dc.publisher.none.fl_str_mv |
BMC |
| publisher.none.fl_str_mv |
BMC |
| dc.source.none.fl_str_mv |
BMC BIOLOGY ISSN: 17417007 reponame:r-FISABIO. Repositorio Institucional de Producción Científica instname:Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO) |
| instname_str |
Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO) |
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r-FISABIO. Repositorio Institucional de Producción Científica |
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r-FISABIO. Repositorio Institucional de Producción Científica |
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|
| repository.mail.fl_str_mv |
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1869407362437087232 |
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15,812455 |