VERDI [Dataset]

File1: VERDI_samples_parameters.xlsx - Physico-chemical variables obtained from CTD profile - Inorganic nutrients concentrations - Chlorophyll-a concentrations - Organic carbon and nitrogen concentrations - Phytoplankton abundances - Detections of chytrids File 2: VERDI_asv_table.tbl: ASV abundances...

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Authors: Reñé, Albert, Timoneda Solé, Natàlia, Sarno, Diana, Zingone, Adriana, Margiotta, Francesca, Passarelli, Augusto, Gallia, Roberto, Tramontano, Ferdinando, Montresor, Marina, Garcés, Esther
Format: conjunto de datos
Publication Date:2022
Country:España
Institution:Consejo Superior de Investigaciones Científicas (CSIC)
Repository:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/279412
Online Access:http://hdl.handle.net/10261/279412
https://doi.org/10.20350/digitalCSIC/14744
Access Level:Open access
Keyword:Parasites
Chytrids
Diatoms
LTER
Metabarcoding
id ES_4326e3a586e2e6fad72c6b97d87bb16d
oai_identifier_str oai:digital.csic.es:10261/279412
network_acronym_str ES
network_name_str España
repository_id_str
dc.title.none.fl_str_mv VERDI [Dataset]
title VERDI [Dataset]
spellingShingle VERDI [Dataset]
Reñé, Albert
Parasites
Chytrids
Diatoms
LTER
Metabarcoding
title_short VERDI [Dataset]
title_full VERDI [Dataset]
title_fullStr VERDI [Dataset]
title_full_unstemmed VERDI [Dataset]
title_sort VERDI [Dataset]
dc.creator.none.fl_str_mv Reñé, Albert
Timoneda Solé, Natàlia
Sarno, Diana
Zingone, Adriana
Margiotta, Francesca
Passarelli, Augusto
Gallia, Roberto
Tramontano, Ferdinando
Montresor, Marina
Garcés, Esther
author Reñé, Albert
author_facet Reñé, Albert
Timoneda Solé, Natàlia
Sarno, Diana
Zingone, Adriana
Margiotta, Francesca
Passarelli, Augusto
Gallia, Roberto
Tramontano, Ferdinando
Montresor, Marina
Garcés, Esther
author_role author
author2 Timoneda Solé, Natàlia
Sarno, Diana
Zingone, Adriana
Margiotta, Francesca
Passarelli, Augusto
Gallia, Roberto
Tramontano, Ferdinando
Montresor, Marina
Garcés, Esther
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv European Commission
Ministerio de Ciencia, Innovación y Universidades (España)
Stazione Zoologica Anton Dohrn
Agencia Estatal de Investigación (España)
Reñé, Albert [0000-0002-0488-3539]
Timoneda Solé, Natàlia [0000-0001-9955-0712]
Sarno, Diana [0000-0001-9697-5301]
Zingone, Adriana [0000-0001-5946-6532]
Margiotta, Francesca [0000-0001-5946-6532]
Montresor, Marina [0000-0002-2475-1787]
Garcés, Esther [0000-0002-2712-501X]
Timoneda Solé, Natàlia ; Sarno, Diana; Zingone, Adriana; Margiotta, Francesca; Passarelli, Augusto; Gallia, Roberto; Tramontano, Ferdinando
Reñé, Albert
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Parasites
Chytrids
Diatoms
LTER
Metabarcoding
topic Parasites
Chytrids
Diatoms
LTER
Metabarcoding
description File1: VERDI_samples_parameters.xlsx - Physico-chemical variables obtained from CTD profile - Inorganic nutrients concentrations - Chlorophyll-a concentrations - Organic carbon and nitrogen concentrations - Phytoplankton abundances - Detections of chytrids File 2: VERDI_asv_table.tbl: ASV abundances from natural samples and incubations File 3: VERDI_tax_table.tbl: Taxonomic assignments of ASVs File 4: VERDI_asv_seqs.fa: Sequences of ASVs File 5: VERDI_incubations_images.zip - Compilation of images taken during incubations with diatoms
publishDate 2022
dc.date.none.fl_str_mv 2022
2022
2022
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
format dataset
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/279412
https://doi.org/10.20350/digitalCSIC/14744
url http://hdl.handle.net/10261/279412
https://doi.org/10.20350/digitalCSIC/14744
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv #PLACEHOLDER_PARENT_METADATA_VALUE#
#PLACEHOLDER_PARENT_METADATA_VALUE#
info:eu-repo/grantAgreement/EC/H2020/730984
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-112978GB-I00
Reñé, Albert; Timoneda Solé, Natàlia; Sarno, Diana; Piredda, Roberta; Zampicinini, G., Zingone, Adriana; Montresor, Marina; Garcés, Esther; Vertical and temporal distribution of chytrids infecting diatoms in the Gulf of Naples (Italy, Mediterranean Sea); Marine Ecology 44(3): e12726 (2023)
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv CSIC - Instituto de Ciencias del Mar (ICM)
publisher.none.fl_str_mv CSIC - Instituto de Ciencias del Mar (ICM)
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869407003741257728
spelling VERDI [Dataset]Reñé, AlbertTimoneda Solé, NatàliaSarno, DianaZingone, AdrianaMargiotta, FrancescaPassarelli, AugustoGallia, RobertoTramontano, FerdinandoMontresor, MarinaGarcés, EstherParasitesChytridsDiatomsLTERMetabarcodingFile1: VERDI_samples_parameters.xlsx - Physico-chemical variables obtained from CTD profile - Inorganic nutrients concentrations - Chlorophyll-a concentrations - Organic carbon and nitrogen concentrations - Phytoplankton abundances - Detections of chytrids File 2: VERDI_asv_table.tbl: ASV abundances from natural samples and incubations File 3: VERDI_tax_table.tbl: Taxonomic assignments of ASVs File 4: VERDI_asv_seqs.fa: Sequences of ASVs File 5: VERDI_incubations_images.zip - Compilation of images taken during incubations with diatomsThe presence of phytoplankton parasites along the water column was explored at the Long Term Ecological Station MareChiara (LTER-MC) in the Gulf of Naples (Mediterranean Sea) in October 2019. Microscopy analyses showed diatoms dominating the phytoplankton community in the upper layers (0-20 m). Metabarcoding data from the water column showed the presence of Chytridiomycota predominantly in the upper layers coinciding with the vertical distribution of diatoms. Laboratory incubations of natural samples enriched with different diatom cultures confirmed parasitic interactions of some of those chytrids – including members of Kappamyces – with diatom taxa. The temporal dynamics of diatoms and chytrids was also explored in a three-year metabarcoding time-series (2011-2013) from surface waters of the study area and in sediment samples. Chytrids were recurrently present at low relative abundances, and some taxa found to infect diatoms in the incubation experiments were also identified in the ASV time-series. However, co-occurrence analyses did not show any clear or recurrent pairing patterns for chytrid and diatom taxa along the three years. The chytrid community in the sediments showed a clearly different species composition compared to the recorded in the water column samples, with higher diversity and relative abundance. The combination of observations, incubations and metabarcoding confirmed that parasites are a common component of marine protist communities at LTER-MC. Host-parasite interactions must be determined and quantified to understand their role and the impact they have on phytoplankton dynamics- European Union’s Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project. - Spanish MICINN Project SMART (PID2020-112978GB-I00) - The research program LTER-MC is funded by the Stazione Zoologica Anton DohrnWith the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)- Physico-chemical variables obtained from CTD profile - Inorganic nutrients concentrations - Chlorophyll-a concentrations - Organic carbon and nitrogen concentrations - Phytoplankton abundances - Detections of chytrids - Metabarcoding ASV abundances from natural samples and incubations - Metabarcoding Taxonomic assignments of ASVs - Metabarcoding Sequences of ASVs - Compilation of images taken during incubations with diatomsPeer reviewedCSIC - Instituto de Ciencias del Mar (ICM)European CommissionMinisterio de Ciencia, Innovación y Universidades (España)Stazione Zoologica Anton DohrnAgencia Estatal de Investigación (España)Reñé, Albert [0000-0002-0488-3539]Timoneda Solé, Natàlia [0000-0001-9955-0712]Sarno, Diana [0000-0001-9697-5301]Zingone, Adriana [0000-0001-5946-6532]Margiotta, Francesca [0000-0001-5946-6532]Montresor, Marina [0000-0002-2475-1787]Garcés, Esther [0000-0002-2712-501X]Timoneda Solé, Natàlia ; Sarno, Diana; Zingone, Adriana; Margiotta, Francesca; Passarelli, Augusto; Gallia, Roberto; Tramontano, FerdinandoReñé, AlbertConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202220222022info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1http://hdl.handle.net/10261/279412https://doi.org/10.20350/digitalCSIC/14744reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/EC/H2020/730984info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-112978GB-I00Reñé, Albert; Timoneda Solé, Natàlia; Sarno, Diana; Piredda, Roberta; Zampicinini, G., Zingone, Adriana; Montresor, Marina; Garcés, Esther; Vertical and temporal distribution of chytrids infecting diatoms in the Gulf of Naples (Italy, Mediterranean Sea); Marine Ecology 44(3): e12726 (2023)Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2794122026-05-22T06:33:51Z
score 15,812455

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