A new classification of Cyperaceae (Poales) supported by phylogenomic data
Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecolo...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2021 |
| País: | Brasil |
| Recursos: | Universidade Federal de Lavras (UFLA) |
| Repositorio: | Repositório Institucional da UFLA |
| Idioma: | inglés |
| OAI Identifier: | oai:repositorio.ufla.br:1/49527 |
| Acesso em linha: | https://repositorio.ufla.br/handle/1/49527 |
| Access Level: | acceso abierto |
| Palavra-chave: | Angiosperms353 Classification Cyperaceae Phylogenomics Poales Systematics Targeted sequencing Taxonomy |
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| dc.title.pt_BR.fl_str_mv |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| title |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| spellingShingle |
A new classification of Cyperaceae (Poales) supported by phylogenomic data Larridon, Isabel Angiosperms353 Classification Cyperaceae Phylogenomics Poales Systematics Targeted sequencing Taxonomy |
| title_short |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| title_full |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| title_fullStr |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| title_full_unstemmed |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| title_sort |
A new classification of Cyperaceae (Poales) supported by phylogenomic data |
| dc.creator.none.fl_str_mv |
Larridon, Isabel Zuntini, Alexandre R. Léveillé‐Bourret, Étienne Barrett, Russell L. Starr, Julian R. Muasya, A. Muthama Villaverde, Tamara Bauters, Kenneth Brewer, Grace E. Bruhl, Jeremy J. Costa, Suzana M. Elliott, Tammy L. Epitawalage, Niroshini Escudero, Marcial Fairlie, Isabel Goetghebeur, Paul Hipp, Andrew L. Jiménez‐Mejías, Pedro Kikuchi, Izai A.B. Sabino Luceño, Modesto Márquez‐Corro, José Ignacio Martín‐Bravo, Santiago Maurin, Olivier Pokorny, Lisa Roalson, Eric H. Semmouri, Ilias Simpson, David A. Spalink, Daniel Thomas, W. Wayt Wilson, Karen L. Xanthos, Martin Forest, Félix Baker, William J. |
| author |
Larridon, Isabel |
| author_facet |
Larridon, Isabel Zuntini, Alexandre R. Léveillé‐Bourret, Étienne Barrett, Russell L. Starr, Julian R. Muasya, A. Muthama Villaverde, Tamara Bauters, Kenneth Brewer, Grace E. Bruhl, Jeremy J. Costa, Suzana M. Elliott, Tammy L. Epitawalage, Niroshini Escudero, Marcial Fairlie, Isabel Goetghebeur, Paul Hipp, Andrew L. Jiménez‐Mejías, Pedro Kikuchi, Izai A.B. Sabino Luceño, Modesto Márquez‐Corro, José Ignacio Martín‐Bravo, Santiago Maurin, Olivier Pokorny, Lisa Roalson, Eric H. Semmouri, Ilias Simpson, David A. Spalink, Daniel Thomas, W. Wayt Wilson, Karen L. Xanthos, Martin Forest, Félix Baker, William J. |
| author_role |
author |
| author2 |
Zuntini, Alexandre R. Léveillé‐Bourret, Étienne Barrett, Russell L. Starr, Julian R. Muasya, A. Muthama Villaverde, Tamara Bauters, Kenneth Brewer, Grace E. Bruhl, Jeremy J. Costa, Suzana M. Elliott, Tammy L. Epitawalage, Niroshini Escudero, Marcial Fairlie, Isabel Goetghebeur, Paul Hipp, Andrew L. Jiménez‐Mejías, Pedro Kikuchi, Izai A.B. Sabino Luceño, Modesto Márquez‐Corro, José Ignacio Martín‐Bravo, Santiago Maurin, Olivier Pokorny, Lisa Roalson, Eric H. Semmouri, Ilias Simpson, David A. Spalink, Daniel Thomas, W. Wayt Wilson, Karen L. Xanthos, Martin Forest, Félix Baker, William J. |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.por.fl_str_mv |
Angiosperms353 Classification Cyperaceae Phylogenomics Poales Systematics Targeted sequencing Taxonomy |
| topic |
Angiosperms353 Classification Cyperaceae Phylogenomics Poales Systematics Targeted sequencing Taxonomy |
| description |
Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C4 photosynthesis and holocentric chromosomes. Goetghebeur′s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower, and embryo characters, plus anatomical and other information. Since then, several family-level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family-wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. In addition, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal, and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time, we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes, and 10 subtribes, and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae, and Oreobolinae. |
| publishDate |
2021 |
| dc.date.issued.fl_str_mv |
2021-05-08 |
| dc.date.accessioned.fl_str_mv |
2022-03-21T16:45:05Z |
| dc.date.available.fl_str_mv |
2022-03-21T16:45:05Z |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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publishedVersion |
| dc.identifier.citation.fl_str_mv |
LARRIDON, I. et al. A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution, [S.l.], v. 59, n. 4, p. 852-895, July 2021. DOI: 10.1111/jse.12757. |
| dc.identifier.uri.fl_str_mv |
https://repositorio.ufla.br/handle/1/49527 |
| identifier_str_mv |
LARRIDON, I. et al. A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution, [S.l.], v. 59, n. 4, p. 852-895, July 2021. DOI: 10.1111/jse.12757. |
| url |
https://repositorio.ufla.br/handle/1/49527 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
| dc.rights.driver.fl_str_mv |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ info:eu-repo/semantics/openAccess |
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Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ |
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openAccess |
| dc.publisher.none.fl_str_mv |
Wiley |
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Wiley |
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Journal of Systematics and Evolution (JSE) |
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reponame:Repositório Institucional da UFLA instname:Universidade Federal de Lavras (UFLA) instacron:UFLA |
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UFLA |
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2022-03-21T16:45:05Z2022-03-21T16:45:05Z2021-05-08LARRIDON, I. et al. A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution, [S.l.], v. 59, n. 4, p. 852-895, July 2021. DOI: 10.1111/jse.12757.https://repositorio.ufla.br/handle/1/49527Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology due to their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C4 photosynthesis and holocentric chromosomes. Goetghebeur′s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower, and embryo characters, plus anatomical and other information. Since then, several family-level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family-wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. In addition, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal, and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time, we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes, and 10 subtribes, and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae, and Oreobolinae.WileyAttribution 4.0 Internationalhttp://creativecommons.org/licenses/by/4.0/info:eu-repo/semantics/openAccessJournal of Systematics and Evolution (JSE)reponame:Repositório Institucional da UFLAinstname:Universidade Federal de Lavras (UFLA)instacron:UFLAAngiosperms353ClassificationCyperaceaePhylogenomicsPoalesSystematicsTargeted sequencingTaxonomyA new classification of Cyperaceae (Poales) supported by phylogenomic datainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleengLarridon, IsabelZuntini, Alexandre R.Léveillé‐Bourret, ÉtienneBarrett, Russell L.Starr, Julian R.Muasya, A. MuthamaVillaverde, TamaraBauters, KennethBrewer, Grace E.Bruhl, Jeremy J.Costa, Suzana M.Elliott, Tammy L.Epitawalage, NiroshiniEscudero, MarcialFairlie, IsabelGoetghebeur, PaulHipp, Andrew L.Jiménez‐Mejías, PedroKikuchi, Izai A.B. SabinoLuceño, ModestoMárquez‐Corro, José IgnacioMartín‐Bravo, SantiagoMaurin, OlivierPokorny, LisaRoalson, Eric H.Semmouri, IliasSimpson, David A.Spalink, DanielThomas, W. WaytWilson, Karen L.Xanthos, MartinForest, FélixBaker, William J.ORIGINALARTIGO_A new classification of Cyperaceae (Poales) supported by phylogenomic data.pdfARTIGO_A new classification of Cyperaceae (Poales) supported by phylogenomic data.pdfapplication/pdf7868973https://repositorio.ufla.br/bitstreams/8480be50-4049-46f8-a856-35988e7ac8e1/download3694d98ff56d9575bbcd178d46448640MD51trueAnonymousREADCC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; charset=utf-8907https://repositorio.ufla.br/bitstreams/15a38e8a-0803-434d-bd38-7cf51df5aaa2/downloadc07b6daef3dbee864bf87e6aa836cde2MD52falseAnonymousREADLICENSElicense.txtlicense.txttext/plain; charset=utf-8953https://repositorio.ufla.br/bitstreams/3fca660b-973c-4c68-b535-847e828bcffe/download760884c1e72224de569e74f79eb87ce3MD53falseAnonymousREAD1/495272025-08-07 09:06:13.4http://creativecommons.org/licenses/by/4.0/Attribution 4.0 Internationalopen.accessoai:repositorio.ufla.br:1/49527https://repositorio.ufla.brRepositório InstitucionalPUBhttps://repositorio.ufla.br/server/oai/requestnivaldo@ufla.br || repositorio.biblioteca@ufla.bropendoar:2025-08-07T12:06:13Repositório Institucional da UFLA - Universidade Federal de Lavras (UFLA)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 |
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