INSECT 2.0: A web-server for genome-wide cis-regulatory modules prediction

INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional...

ver descrição completa

Detalhes bibliográficos
Autores: Parra, Rodrigo Gonzalo, Rohr, Cristian Oscar, Koile, Daniel Isaac, Perez Castro, Carolina Ines, Yankilevich, Patricio
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2016
País:Argentina
Recursos:Consejo Nacional de Investigaciones Científicas y Técnicas
Repositorio:CONICET Digital (CONICET)
Idioma:inglés
OAI Identifier:oai:ri.conicet.gov.ar:11336/37980
Acesso em linha:http://hdl.handle.net/11336/37980
Access Level:acceso abierto
Palavra-chave:Bioinformatics
Crms
Insect
Gene Expression
https://purl.org/becyt/ford/1.2
https://purl.org/becyt/ford/1
https://purl.org/becyt/ford/1.6
Descrição
Resumo:INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience.